{"_id":"chr7:g.24283895C>G","_version":1,"chrom":"7","dbsnp":{"_license":"http://bit.ly/2AqoLOc","alleles":[{"allele":"C","freq":{"dbgap_popfreq":1.0,"tommo":1.0}},{"allele":"G","freq":{"dbgap_popfreq":0.0}},{"allele":"T","freq":{"dbgap_popfreq":0.0,"tommo":0.0}}],"alt":"G","chrom":"7","dbsnp_build":156,"gene":[{"geneid":4852,"is_pseudo":false,"name":"neuropeptide Y","rnas":[{"protein_product":{"refseq":"NP_000896.1"},"refseq":"NM_000905.4","so":[{"accession":"SO:0001986","name":"upstream_transcript_variant"}]}],"so":[{"accession":"SO:0001636","name":"2KB_upstream_variant"}],"strand":"+","symbol":"NPY"},{"geneid":107986777,"is_pseudo":false,"name":"uncharacterized LOC107986777","rnas":[{"refseq":"XR_001745121.2","so":[{"accession":"SO:0001627","name":"intron_variant"}]},{"refseq":"XR_001745122.2","so":[{"accession":"SO:0001627","name":"intron_variant"}]},{"refseq":"XR_001745123.2","so":[{"accession":"SO:0001627","name":"intron_variant"}]},{"refseq":"XR_001745124.2","so":[{"accession":"SO:0001627","name":"intron_variant"}]},{"refseq":"XR_001745125.2","so":[{"accession":"SO:0001627","name":"intron_variant"}]},{"refseq":"XR_001745127.2","so":[{"accession":"SO:0001627","name":"intron_variant"}]},{"refseq":"XR_001745128.2","so":[{"accession":"SO:0002153","name":"genic_upstream_transcript_variant"}]},{"refseq":"XR_001745129.2","so":[{"accession":"SO:0001627","name":"intron_variant"}]},{"refseq":"XR_001745130.2","so":[{"accession":"SO:0001627","name":"intron_variant"}]},{"refseq":"XR_001745131.2","so":[{"accession":"SO:0001627","name":"intron_variant"}]},{"refseq":"XR_001745132.2","so":[{"accession":"SO:0001627","name":"intron_variant"}]},{"refseq":"XR_007060254.1","so":[{"accession":"SO:0001627","name":"intron_variant"}]},{"refseq":"XR_007060255.1","so":[{"accession":"SO:0001627","name":"intron_variant"}]},{"refseq":"XR_007060256.1","so":[{"accession":"SO:0001627","name":"intron_variant"}]},{"refseq":"XR_007060257.1","so":[{"accession":"SO:0001627","name":"intron_variant"}]},{"refseq":"XR_007060258.1","so":[{"accession":"SO:0002153","name":"genic_upstream_transcript_variant"}]}],"strand":"-","symbol":"LOC107986777"}],"hg38":{"end":24283895,"start":24283895},"ref":"C","rsid":"rs974308553","vartype":"snv"},"gnomad_genome":{"_license":"http://bit.ly/2I1cl1I","ac":{"ac":3,"ac_afr":0,"ac_afr_xx":0,"ac_afr_xy":0,"ac_ami":0,"ac_ami_xx":0,"ac_ami_xy":0,"ac_amr":0,"ac_amr_xx":0,"ac_amr_xy":0,"ac_asj":0,"ac_asj_xx":0,"ac_asj_xy":0,"ac_eas":3,"ac_eas_xx":3,"ac_eas_xy":0,"ac_fin":0,"ac_fin_xx":0,"ac_fin_xy":0,"ac_mid":0,"ac_mid_xx":0,"ac_mid_xy":0,"ac_nfe":0,"ac_nfe_xx":0,"ac_nfe_xy":0,"ac_oth":0,"ac_oth_xx":0,"ac_oth_xy":0,"ac_sas":0,"ac_sas_xx":0,"ac_sas_xy":0,"ac_xx":3,"ac_xy":0},"af":{"af":0.0000197117,"af_afr":0.0,"af_afr_xx":0.0,"af_afr_xy":0.0,"af_ami":0.0,"af_ami_xx":0.0,"af_ami_xy":0.0,"af_amr":0.0,"af_amr_xx":0.0,"af_amr_xy":0.0,"af_asj":0.0,"af_asj_xx":0.0,"af_asj_xy":0.0,"af_eas":0.000580495,"af_eas_xx":0.00132159,"af_eas_xy":0.0,"af_fin":0.0,"af_fin_xx":0.0,"af_fin_xy":0.0,"af_mid":0.0,"af_mid_xx":0.0,"af_mid_xy":0.0,"af_nfe":0.0,"af_nfe_xx":0.0,"af_nfe_xy":0.0,"af_oth":0.0,"af_oth_xx":0.0,"af_oth_xy":0.0,"af_sas":0.0,"af_sas_xx":0.0,"af_sas_xy":0.0,"af_xx":0.0000385356,"af_xy":0.0},"alleles":"G","alt":"G","an":{"an":152194,"an_afr":41460,"an_afr_xx":22154,"an_afr_xy":19306,"an_ami":912,"an_ami_xx":470,"an_ami_xy":442,"an_amr":15288,"an_amr_xx":6792,"an_amr_xy":8496,"an_asj":3468,"an_asj_xx":1866,"an_asj_xy":1602,"an_eas":5168,"an_eas_xx":2270,"an_eas_xy":2898,"an_fin":10622,"an_fin_xx":2574,"an_fin_xy":8048,"an_mid":316,"an_mid_xx":164,"an_mid_xy":152,"an_nfe":68034,"an_nfe_xx":39360,"an_nfe_xy":28674,"an_oth":2094,"an_oth_xx":1034,"an_oth_xy":1060,"an_sas":4832,"an_sas_xx":1166,"an_sas_xy":3666,"an_xx":77850,"an_xy":74344},"as_fs":1.44649e-15,"as_mq":{"as_mq":60.0,"as_mqranksum":-0.926},"as_pab_max":1.0,"as_qd":14.3867,"as_readposranksum":0.204,"as_sor":0.732017,"as_vqslod":4.7055,"chrom":"7","hom":{"hom":0,"hom_afr":0,"hom_afr_xx":0,"hom_afr_xy":0,"hom_ami":0,"hom_ami_xx":0,"hom_ami_xy":0,"hom_amr":0,"hom_amr_xx":0,"hom_amr_xy":0,"hom_asj":0,"hom_asj_xx":0,"hom_asj_xy":0,"hom_eas":0,"hom_eas_xx":0,"hom_eas_xy":0,"hom_fin":0,"hom_fin_xx":0,"hom_fin_xy":0,"hom_mid":0,"hom_mid_xx":0,"hom_mid_xy":0,"hom_nfe":0,"hom_nfe_xx":0,"hom_nfe_xy":0,"hom_oth":0,"hom_oth_xx":0,"hom_oth_xy":0,"hom_sas":0,"hom_sas_xx":0,"hom_sas_xy":0,"hom_xx":0,"hom_xy":0},"inbreedingcoeff":-0.0000197887,"pos":24283895,"ref":"C","rsid":"rs974308553","type":"snp"},"hg38":{"end":24283895,"start":24283895},"observed":true,"snpeff":{"_license":"http://bit.ly/2suyRKt","ann":[{"distance_to_feature":"293","effect":"upstream_gene_variant","feature_id":"NM_000905.3","feature_type":"transcript","gene_id":"NPY","genename":"NPY","hgvs_c":"c.-1346C>G","putative_impact":"MODIFIER","transcript_biotype":"protein_coding"},{"effect":"intergenic_region","feature_id":"STK31-NPY","feature_type":"intergenic_region","gene_id":"STK31-NPY","genename":"STK31-NPY","hgvs_c":"n.24283895C>G","putative_impact":"MODIFIER"}]},"vcf":{"alt":"G","position":"24283895","ref":"C"}}